Theo Pepler

Research | Teaching | Software | Links and resources | HOWTO's

# Software

The software packages listed below are for the R programming language for statistical computing. You will therefore need a working installation of R (freely downloadable from one of the many CRAN mirrors), whereafter you can follow the installation instructions as outlined here.

For any bug reports or suggestions, please send me an e-mail.

cpc: Common principal component (CPC) analysis and applications

Version: 0.1-5
Date: 2015-03-06
License: GPL-2

This package contains tools for common principal component (CPC) analysis and applications of the CPC model to various other statistical techniques. Functions are available for covariance matrix estimation, discriminant analysis and biplots, all under the CPC model.

harbin: Harbin quantification for RT-qPCR data

Version: 0.1-5
Date: 2015-12-22
License: GPL-2

Performs Harbin quantification for reverse transcription quantitative PCR (RT-qPCR) data. Currently offers support only for files produced by the Qiagen Rotor-Gene Q thermal cycler, but the package can be extended per request to support other technologies.

nonpar: Collection of methods for non-parametric analysis

Version: 0.1-1
Date: 2015-09-17
License: GPL-2

This package contains methods for non-parametric data analysis. At the moment only some tests for the two-sample location-scale problem are given, but more will be added in future versions.

theolib: Collection of auxiliary functions

Version: 0.0-4
Date: 2016-01-19
License: GPL-3

A collection of various auxiliary functions to ease matrix manipulation in R. This package may contain code for functions (and wrappers for functions) already implemented in other R packages, but is mostly for my personal use.