Theo Pepler

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HOWTO: RENDER AN R MARKDOWN DOCUMENT FROM THE COMMAND LINE

1. You should have pandoc installed on the system. You can check this with
   
   which pandoc
   
   or install it with
   
   sudo apt install pandoc
   
   
2. Then from the command line, use
   
   Rscript -e "rmarkdown::render('inputfile.Rmd')"
   
   where inputfile.Rmd is the R markdown file you want to produce output for.